Overview

This is a project page for understanding the impacts of selection on inferences of migration.

Simulations in SLiM

We considered several different models, all implemented in SLiM, tskit, and pyslim. First, we considered a set of relatively simple models that differed in DFE and the presence or absense of gene flow. Then, we considered complex models with more realistic DFEs, recombination maps, and mutation rate variation.

Simple Models

Complex Models

SFS-based methods

Building the SFS

∂a∂i

Rougeux

fastsimcoal2

BPP

Running BPP

Bayes Factors

Summary Statistics

Calculate Statistics